Bongo Event- In the Sheikah campaign you will now be offered to join Bongo and her interlopers, with different outcomes based on your response.
Yaraxonal or Vaati choice- At the start of the Darknut campaign you will be asked if you want to have Yaraxonal or Vaati as your advisor, which will affect your relations with nearby factions.
Volvagian alliance- after the gerudo or lizalfos gain a certain number of settlements an event will pop up telling them that the Volvagians have joined them, Dakkon will also join as a hero unit.
Demise change- Demise will now start off in his Imprisoned form, but after getting killed he will turn into his humanish form.
Dethl appears- Dethl will join the stalfos at around turn 30 so long as they have Kakariko under their control.
Capital and temple garrisons- when a captal or temple are under siege a unit will spawn for that faction in a similar fashion as the triforce vanguard, a list of which can be seen in previous posts.
building file differences:
-several factions can now recruit spies and assassins in bars/taverns, the Sheikah can recruit there actual unit versions as well
-if the sheikah say yes to the bongo event then they will be able to recruit the units, they wouldn't be able to in death stance.
-Labbrynna now have a building that boosts their "religion", called the museum of technology, they can also recruit a priest now as well. thanks to eldren for that one.
-fixed the bug that causes the tarm foundation to be buildable by everyone
-fixed a problem where certain factions couldn't build markets
other changes:
-Events now happen, so you know what is going on

-Prince Zant now becomes King Zant upon winning the Civil War
-Olg now starts as a hero unit for Zant
-The Sheikah can now go into death stance without crashing the game, but they won't get Kakariko
-The Sheikah can now build Goddess Cathedrals
-may be one or two things I missed but I think that is everything