Rule #1: Never insert a flashdrive to a computer that has a virus. At least an active one.
Basically, PoleCat got the gist of what I was saying. Download
Ubuntu, and burn it to a disk. (Follow the walkthroughs on that page to do that.)
Download a partition manager (I've only ever used Paragon but I paid for it. If you don't want to pay, check out
this link.) and create a new partition. (Find documentation for the software you chose. If you can't, just come back here, we can give you a hand.) Boot Ubuntu LIVE. To do this, insert the disk, turn on your PC. When it gets to the BIOS screen, mash F-11 - this is usually the boot menu. It will say "Press any key to boot from CD..." Press any key, and wait a bit. Be sure to choose live boot. Load Ubuntu. Go through your main Windows installation. Find all the files you want to keep, and put them in a folder on your new partition. Then install Windows onto that partition. Load that Windows and see if you're still infected. If you run into any problems, or need more detail, post here. For now, I'm going to bed. Sorry if this seems groggy.
Also, a quick note:
Some partition managers may not work because they rely on Windows services. If the service is infected, it might not function. If that's the case, try another one. Now go kick some virus ass!