I'm having the same problem, but I havn't touched those options. The only advanced options I've changed are enabling TAR units relaxed availability, enabled Full Enhanced Smoke, and enabled Artillery Faster Reload. Should we not change any options in the advanced screen?
Also, do we need to make any option changes everytime, or should TAR 'remember' the options we've made previously?
Amazing mod, by the way. I've had a great time playing it for the last couple of days, but I've reinstalled the mod four times already and it looks like I'm about to make it a fifth reinstall. Thankfully the install process is painless, but I'd much rather be spending that time spanking the British!