As I was, I thought the naval changes would carry over but they were edited slightly. The only thing wrong I found so far was that Spain's Mediterranean trading port was Cartagena, not Barcelona or whatever it is.
On the positive side, I saw Spain drop off a whole stack in Florida to take back St. Augustine
from the Cherokees, and France took back French Guyana from the Dutch
Take a look at the CAI for Darth Mod. I cut out most of the files that conflicted with APE, and the result has been pretty good, Wars happen
much less now.